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Task E1 · multi hop synthesis

Via what intermediate binding partner does BRCA1 reach downstream DNA-repair effector proteins, according to the corpus, and which effectors are named?

Gold evidence

Acceptable answer concepts

  • BARD1 is BRCA1's obligate binding partner
  • BARD1's intrinsically disordered region engages RAD51, BLM, and WRN

Construction note

Requires chaining two facts from the same abstract (BRCA1-BARD1 heterodimer; BARD1-RAD51/BLM/WRN engagement) rather than a single lookup -- a minimal within-document multi-hop case for v0.

How each architecture answered

Baseline 0 · no retrieval

Yuu no Sekai · 464 tokens · 4.2s

(abstained) No evidence passages were retrieved for this question, so the specific intermediate binding partner of BRCA1 and the named downstream DNA-repair effector proteins could not be identified.

abstentionverifiedconf 1.00

The specific intermediate binding partner of BRCA1 and downstream DNA-repair effector proteins could not be identified due to lack of evidence.

run_failed: 0abstention_correct: 0%concept_coverage: 50%

Baseline 1 · retrieve + synthesize

Yuu no Sekai · 2272 tokens · 7.8s
query(ies): Via what intermediate binding partner does BRCA1 reach downstream DNA-repair effector proteins, according to the corpus, and which effectors are named?

BRCA1 reaches downstream DNA-repair effector proteins via the intermediate binding partner BARD1. The named effectors are RAD51, BLM, WRN, RAD50, MYC, and RB.

relationverifiedconf 1.00

BRCA1 reaches downstream DNA-repair effector proteins via BARD1 as an intermediate binding partner.

PMID:42678585Direct supportPMID:42693354Direct support
factualverifiedconf 1.00

The DNA-repair effector proteins named in the corpus include RAD51, BLM, WRN, RAD50, MYC, and RB.

PMID:42678585Direct supportPMID:42693354Direct support
run_failed: 0retrieval_recall_at_k: 100%retrieval_mrr: 100%claim_support_rate: 100%unsupported_claim_rate: 0%citation_precision: 100%source_validity_rate: 100%abstention_correct: 100%concept_coverage: 50%

Agent 1 · planner + retrieve + synthesize

Yuu no Sekai · 2445 tokens · 6.1s
query(ies): BRCA1 intermediate binding partner DNA-repair effector proteins | BRCA1 downstream DNA-repair effectors named
planner → {"queries": ["BRCA1 intermediate binding partner DNA-repair effector proteins", "BRCA1 downstream DNA-repair effectors named"]}

BRCA1 reaches downstream DNA-repair effector proteins via the intermediate binding partner BARD1. The named effectors are RAD51, BLM, and WRN.

factualverifiedconf 0.95

BARD1 is the intermediate binding partner of BRCA1 that facilitates its interaction with downstream DNA-repair effector proteins.

PMID:42678585Direct support
factualverifiedconf 0.95

The DNA-repair effector proteins named in the passage include RAD51, BLM, and WRN.

PMID:42678585Direct support
run_failed: 0retrieval_recall_at_k: 100%retrieval_mrr: 100%claim_support_rate: 100%unsupported_claim_rate: 0%citation_precision: 100%source_validity_rate: 100%abstention_correct: 100%concept_coverage: 50%