BioResearchAgent

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Task G1 · insufficient evidence

Does the corpus provide evidence that DDIAS directly binds or interacts with BRCA1?

Gold evidence

None — this is a deliberate “insufficient evidence” trap. The correct behavior is abstention.

Acceptable answer concepts

  • insufficient evidence
  • corpus describes DDIAS with TOPBP1 and CIP2A, not BRCA1

Construction note

PMID:42636811 (the only DDIAS document in the corpus) names TOPBP1 and CIP2A as DDIAS's partners and never mentions BRCA1. A correct agent must abstain rather than infer a BRCA1 link from topical proximity (both are DNA-repair papers).

How each architecture answered

Baseline 0 · no retrieval

Yuu no Sekai · 417 tokens · 3.0s

(abstained) No evidence was retrieved to answer the question.

abstentionverifiedconf 0.00

The corpus provides evidence that DDIAS directly binds or interacts with BRCA1.

run_failed: 0abstention_correct: 100%concept_coverage: 0%

Baseline 1 · retrieve + synthesize

Yuu no Sekai · 2417 tokens · 9.9s
query(ies): Does the corpus provide evidence that DDIAS directly binds or interacts with BRCA1?

(abstained) The provided evidence does not directly state that DDIAS binds or interacts with BRCA1.

factualverifiedconf 0.95

DDIAS is a mitosis-specific DNA damage response protein and protects single-stranded DNA from aberrant nucleolytic processing to safeguard chromosome integrity during mitosis, particularly in BRCA1-/BRCA2-deficient cells.

PMID:42636811Direct support
factualverifiedconf 0.85

DDIAS plays a critical and evolutionarily conserved role in limiting DNA damage specifically in neural progenitor cells.

PMID:42636811Direct support
factualverifiedconf 0.90

The management of menopausal symptoms in healthy women carrying BRCA1 or BRCA2 mutations is clinically challenging, particularly in those undergoing risk-reducing salpingo-oophorectomy.

PMID:42575068Direct support
factualverifiedconf 0.90

The p53 tumor suppressor protein is a transcription factor that plays a prominent role in protecting cells from malignant transformation.

PMID:31665549Direct support
factualverifiedconf 0.95

Halvade Somatic is a framework for somatic variant calling from DNA sequencing data that reduces runtime significantly compared to the original pipeline.

PMID:35022699Direct support
factualverifiedconf 0.90

Recent advances in molecular diagnostics show that lesions affecting both copies of the gene for tumor suppressor protein 53 (TP53) count among the most powerful predictors for high-risk disease in multiple myeloma (MM).

PMID:31792264Direct support
run_failed: 0retrieval_recall_at_k: 100%retrieval_mrr: 0%citation_precision: 100%source_validity_rate: 100%abstention_correct: 100%concept_coverage: 0%

Agent 1 · planner + retrieve + synthesize

Yuu no Sekai · 2544 tokens · 8.3s
query(ies): DDIAS BRCA1 direct binding | DDIAS BRCA1 interaction evidence
planner → {"queries": ["DDIAS BRCA1 direct binding", "DDIAS BRCA1 interaction evidence"]}

(abstained) The provided evidence does not directly state that DDIAS binds or interacts with BRCA1.

factualverifiedconf 0.95

DDIAS is a mitosis-specific DNA damage response protein and protects single-stranded DNA in BRCA1-deficient cells.

PMID:42636811Direct support
factualverifiedconf 0.90

DDIAS plays a role in limiting DNA damage specifically in neural progenitor cells.

PMID:42636811Direct support
factualverifiedconf 0.95

BRCA1 functions as an obligate heterodimer with BARD1 to coordinate accurate DNA repair.

PMID:42693354Direct support
factualverifiedconf 0.95

BARD1 is the obligate binding partner of BRCA1 and plays a critical role in maintaining genome integrity.

PMID:42678585Direct support
run_failed: 0retrieval_recall_at_k: 100%retrieval_mrr: 0%citation_precision: 100%source_validity_rate: 100%abstention_correct: 100%concept_coverage: 0%